python main.py Fig.3E_Q0255Cortex-CBE-12Wks-GFP_S241_L001_R1_001.fastq.gz out/Fig.3E_Q0255Cortex-CBE-12Wks-GFP_S241_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0257-Cortex-CBE-12Wks-bulk_S35_L001_R1_001.fastq.gz out/Fig.3E_Q0257-Cortex-CBE-12Wks-bulk_S35_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0265Cortex-CBE-24wks-bulk_S6_L001_R1_001.fastq.gz out/Fig.3E_Q0265Cortex-CBE-24wks-bulk_S6_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0265Cortex-CBE-24wks-GFP_S5_L001_R1_001.fastq.gz out/Fig.3E_Q0265Cortex-CBE-24wks-GFP_S5_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0291Cortex_CBE_12Wks_bulk_S19_L001_R1_001.fastq.gz out/Fig.3E_Q0291Cortex_CBE_12Wks_bulk_S19_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0291Cortex_CBE-12Wks_GFP_S20_L001_R1_001.fastq.gz out/Fig.3E_Q0291Cortex_CBE-12Wks_GFP_S20_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0292-cortex-CBE_24wks-bulk_S144_L001_R1_001.fastq.gz out/Fig.3E_Q0292-cortex-CBE_24wks-bulk_S144_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0292-cortex-CBE_24wks-GFP_S157_L001_R1_001.fastq.gz out/Fig.3E_Q0292-cortex-CBE_24wks-GFP_S157_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0295-cortex-CBE_12wks-bulk_S141_L001_R1_001.fastq.gz out/Fig.3E_Q0295-cortex-CBE_12wks-bulk_S141_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0295-cortex-CBE-12wks-GFP_S154_L001_R1_001.fastq.gz out/Fig.3E_Q0295-cortex-CBE-12wks-GFP_S154_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0296Cortex-CBE-12wks-bulk_S14_L001_R1_001.fastq.gz out/Fig.3E_Q0296Cortex-CBE-12wks-bulk_S14_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0296Cortex-CBE-12wks-GFP_S13_L001_R1_001.fastq.gz out/Fig.3E_Q0296Cortex-CBE-12wks-GFP_S13_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0297-cortex-CBE_24wks-GFP_S158_L001_R1_001.fastq.gz out/Fig.3E_Q0297-cortex-CBE_24wks-GFP_S158_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0297-cortex-CBE-24wks-bulk_S145_L001_R1_001.fastq.gz out/Fig.3E_Q0297-cortex-CBE-24wks-bulk_S145_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0300Cortex-CBE_24Wks-bulk_S74_L001_R1_001.fastq.gz out/Fig.3E_Q0300Cortex-CBE_24Wks-bulk_S74_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0300Cortex-CBE-24Wks-GFP_S73_L001_R1_001.fastq.gz out/Fig.3E_Q0300Cortex-CBE-24Wks-GFP_S73_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0359Cortex-CBE-12wks-bulk_S18_L001_R1_001.fastq.gz out/Fig.3E_Q0359Cortex-CBE-12wks-bulk_S18_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0359Striatum-CBE-12wks-bulk_S20_L001_R1_001.fastq.gz out/Fig.3E_Q0359Striatum-CBE-12wks-bulk_S20_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0457-Cortex-CBE-24wks-bulk_S2_L001_R1_001.fastq.gz out/Fig.3E_Q0457-Cortex-CBE-24wks-bulk_S2_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0457-Cortex-CBE-24wks-GFP_S11_L001_R1_001.fastq.gz out/Fig.3E_Q0457-Cortex-CBE-24wks-GFP_S11_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0458-Cortex-CBE-24wks-bulk_S3_L001_R1_001.fastq.gz out/Fig.3E_Q0458-Cortex-CBE-24wks-bulk_S3_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0458-Cortex-CBE-24wks-GFP_S12_L001_R1_001.fastq.gz out/Fig.3E_Q0458-Cortex-CBE-24wks-GFP_S12_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0471-Cortex-CBE-24wks-bulk_S4_L001_R1_001.fastq.gz out/Fig.3E_Q0471-Cortex-CBE-24wks-bulk_S4_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
python main.py Fig.3E_Q0471-Cortex-CBE-24wks-GFP_S13_L001_R1_001.fastq.gz out/Fig.3E_Q0471-Cortex-CBE-24wks-GFP_S13_L001_R1_001 -a CTTCAGGGTCTGTCCCATCGGGCAGGAAGCCGTCATGGCAACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCC --no_trim -amas 80
